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 Crandall Lab Primers

The Crandall Lab Crandall Lab Primers
Quick Links: 12s 16s 18s 28s Cytochrome oxidase CytB ITS M13  Opsin Gene Maps

 

Gene Region Primer Name Primer Sequence (5'-3') Type Application Works On Reference
12s 12S Tphe AAA GCA CRG CAC TGA AGA TGC mitochondrial PCR/Seq salamanders  
12s 12S e GTR CGC TTA CCW TGT TAC GAC T mitochondrial PCR/Seq    
12s 12S a CTG GGA TTA GAT ACC CCA CTA mitochondrial PCR/Seq universal  
12s 12S b TGA GGA GGG TGA CGG GCG GT mitochondrial PCR/Seq universal  
12s 12sf GAA ACC AGG ATT AGA TAC CC mitochondrial PCR/Seq    
12s 12sr TTT CCC GCG AGC GAC GGG CG mitochondrial PCR/Seq    
12s 12s-1f CTT KAA ATT YAA ARA ATT TGG CGG mitochondrial PCR/Seq    
12s 12s-1r AGC GAC GGG CGA TAT GTA C mitochondrial PCR/Seq    
12S 12sDF GTA GAT GTA CTG GAA ACT GCA T nuclear PCR/Seq    
12S 12sDR AAA TCG TGC CAG CCG TCG C nuclear PCR/Seq    
12S 12s MB GAG AGT GAC GGG CGA TGT GT   PCR/Seq    
12S 12S A1 AAA CTA GGA TTA GAT ACC CTA TTA T   PCR/Seq    
             

 

Gene Region Primer Name Primer Sequence (5'-3') Type Application Works On Reference
16s 16S L CGC CTG TTT AAC AAA AAC AT mitochondrial PCR/Seq universal  
16s 16S H CCG GTC TGA ACT CAG ATC ACG T mitochondrial PCR/Seq universal  
16s 16s-1472 AGA TAG AAA CCA ACC TGG mitochondrial PCR/Seq crayfish Crandall and Fitzpatrick, 1996
16s 16S 17sub ATA SRG TCT RAC CTG CCC mitochondrial PCR/Seq crayfish Crandall and Fitzpatrick, 1996
16S 16s-8F AGA GTT TGA TCC TGG CTC AG mitochondrial PCR/Seq    
16S 16s-1492R GGT TAC CTT GTT ACG ACT T mitochondrial PCR/Seq    
16S 16s-Arch21F TTC CGG TTG ATC CYG CCG GA mitochondrial PCR/Seq    
16S 16s-Arch958R YCC GGC GTT GAN TCC AAT T mitochondrial PCR/Seq    
16S 16sf-cray GAC CGT GCK AAG GTA GCA TAA TC mitochondrial PCR/Seq    
16S 16sr-cray CCG GTY TGA ACT CAA ATC ATG TAA A mitochondrial PCR/Seq    
16S 16sA ACT TGA TAT ATA ATT AAA GGG CCG mitochondrial PCR/Seq    
16S 16sB CTG GCG CCG GTC TGA ACT CAA ATC mitochondrial PCR/Seq    
16S 16s 704F GTA GCG GTG AAA TGC GTA GA Internal Bacterial  seq    
16S 16s 907R CCG TCA ATT CCT TTR AGT TT Internal Bacterial seq    
16S 16s ma2 CTA CGG TCC TTT CGT ACT A mitochondrial PCR/Seq    
16S 16s cs2 AGA AAC TGA CCT GGC TTA CG mitochondrial PCR/Seq    
             
16S-12S 16S-SOF.F2 TTC TTC ACC GAG CAG GCC CAA CTC mitochondrial PCR/Seq Cultlefish  
16S-12S 12S-SOF.R2 ATA AGA TAA GTC GTA ACA TAG TAG G mitochondrial PCR/Seq Cultlefish  

 

Gene Region Primer Name Primer Sequence (5'-3') Type Application Works On Reference
18S 18S (5') CTGACGGAAAGATGTCCAAAC nuclear PCR/Seq universal  
18S 18s 1f TAC CTG GTT GAT CCT GCC AGT AG nuclear PCR/Seq    
18s 18s 1.2F TGC TTG TCT CAA AGA TTA AGC nuclear Seq   Whiting, M. F. Zoologica Scripta (2002) 31(1): 93-104
18s 18s 2F AGG GTT CGA TTC CGG AGA GGG AGC nuclear PCR/Seq    
18s 18s 3F GTT CGA TTC CGG AGA GGG A nuclear PCR/Seq    
18S 18S 4R CTT AAT GCG CCG ACG ACC nuclear PCR/Seq    
18S 18S 5R AAG AAC CGT TTA CGA AAG CG